 |
Jonathan
P. Zehr
Professor
of Ocean
Sciences
Ocean Sciences
Department
University
of California
Santa Cruz,
CA 95064
Office:
Earth & Marine
Sciences
A-438
Tel: (831)
459-4009
Fax: (831)
459-4882
Email:
zehrj@ucsc.edu
Other website(s): Zehr Laboratory |
Positions
Held
Education
& Professional
Activities
Recent
Research Publications
Research
Support
Sponsored
Student Research
Teaching
Assignments
POSITIONS
HELD
| 2005-2008 |
Adjunct Scientist, Monterey Bay Aquarium Research Institute (MBARI) |
| 1999-present |
Professor
of Ocean
Sciences,
University
of California,
Santa Cruz
|
| 1995-1999 |
Associate
Professor
of Biology,
Rensselaer
Polytechnic
Institute,
New York |
| 1992-1995 |
Assistant
Professor
of Biology,
Rensselaer
Polytechnic
Institute,
New York |
| 1993-
1999 |
Associate
Director,
Darrin
Fresh Water
Institute,
Rensselaer
Polytechnic
Institute,
New York |
| 1987-1992 |
Research
Assistant
Professor,
State University
of New
York, Stony
Brook,
New York
|
| 1990 |
Visiting
Scientist,
Department
of Cell
Biology,
National
Institute
of Basic
Biology,
Okazaki,
Japan |
| 1988-1990 |
Postdoctoral
Research
Associate,
New England
Biolabs,
Inc., Beverly,
Massachusetts
|
| 1986-1988 |
Research
Collaborator,
Brookhaven
National
Laboratory,
Upton,
New York
|
| 1986 |
Postdoctoral
Research
Associate,
State University
of New
York, Stony
Brook,
New York
|
| 1985-1986 |
USGS
Research
Associate,
National
Research
Council, U.S. Geological
Survey,
Menlo Park,
California
|
| 1981-1985 |
Graduate Research Assistant, University of California, Davis, California |
| 1978-1981 |
Research
Aide, Western
Washington
University,
Bellingham,
Washington
|
EDUCATION
| 1985 |
University of California, Davis, CA
Ph.D. in Ecology-Limnology
Thesis Title:
Dissolved Organic Nitrogen Dynamics and Bacterial Amino Acid Metabolism
in Castle Lake, California
Advisor: Charles R. Goldman |
| 1981 |
Western Washington University, Bellingham, WA
B.S. in Biology |
PROFESSIONAL
ACTIVITIES
Membership
in Professional
Societies
American
Society
of Limnology
and Oceanography.
Member.
American
Society
for Microbiology.
Member.
Phycological
Society
of America.
Member.
American
Association
for the
Advancement
of Science.
Member.
American
Chemical
Society.
Member. |
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Honors
and Awards
| 2004-2009 |
Gordon and Betty Moore Investigator in Marine Microbiology |
| 1998-2000 |
Editorial
Board of
Applied
and Environmental
Microbiology,
the American
Society
of Microbiology
|
| 1996 |
Distinguished
Visiting
Lecturer,
Texas A&M
University,
College
Station,
Texas |
| 1985-1986 |
National
Research
Council
Research
Associateship |
| 1983 |
Jastro-Shields
Research
Fellowship,
University
of California,
Davis,
California |
| 1981-1984 |
National
Science
Foundation
Predoctoral
Fellowship
|
| 1981 |
Outstanding
Student
in Biology,
Western
Washington
University
|
RECENT
RESEARCH PUBLICATIONS
Chapters in press
Zehr, J. P. and H. W. Paerl. In Press. Biological nitrogen fixation in the marine environment. In D. L. Kirchman (ed.) Microbial Ecology of the Oceans. 2nd Edition. Wiley-Liss, Inc.
Stal, L. J. and J. P. Zehr. In Press. Cyanobacterial nitrogen fixation in the ocean. Diversity, regulation and ecology. In A. Herrero and E. Flores (eds) Cyanobacteria: Molecular Biology, Genomics and Evolution. Horizon Scientific Press.
Jenkins, B. D., and J. P. Zehr. In Press. Molecular approaches to the nitrogen cycle. In D. Bronk, M. Mulholland, D. Capone and E. Carpenter (eds). Nitrogen in the Marine Environment. Academic Press.
Karl, D. M., Bidigare, R. R., Church, M. J., Dore, J. E., Letelier, R. M., Mahaffey, C., and Zehr, J. P. In Press. Station ALOHA: An oceanic outpost for investigations of the nitrogen cycle. In Nitrogen in the Marine Environment. Bronk, D., Mulholland, M.R., Capone, D., and Carpenter, E.J. (eds): Academic Press.
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Chapters published (Selected)
Zehr, J. P. and J. P. Montoya. 2007. Measuring N2 fixation in the field. In H. Bothe, S. Ferguson, and W. E. Newton (eds.) Biology of the Nitrogen Cycle. Elsevier B.V. pp. 193-205
Zehr, J. P., Methe’, B. A. and R. Foster. 2005. New nitrogen-fixing microorganisms from the oceans: Biological aspects and global implications. In Y.-P. Wang, M. Lin, Z.-X. Tian, C. Elmerich, W. E. Newton (eds.) Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. Proceedings of the 14th International Nitrogen Fixation Congress. Current Plant Science and Biotechnology in Agriculture. pp. 361-365.
Zehr, J. P., Church, M. J., and P. H. Moisander. 2005. Diversity, distribution and biogeochemical significance of nitrogen-fixing microorganisms in anoxic and suboxic ocean environments. In L. Neretin (ed.) NATO Series book on past and present water column anoxia. Kluwer.
Short, S. M. and J. P. Zehr 2005. Quantitative analysis of nifH genes and transcripts from aquatic environments. In J. Leadbetter (ed.) Methods in Enzymology (Environmental Microbiology). Elsevier.
Zehr, J. P. and D. G. Capone. 2002. N-2 fixation in the marine environment. In G. Bitton (ed.) Encyclopedia of Environmental Microbiology. John Wiley & Sons. pp. 2211-2221.
Zehr, J. P. and P. J. Turner. 2001. Nitrogen fixation: Nitrogenase genes and gene expression. In J. H. Paul (ed.) Methods In Marine Microbiology. Academic Press, New York.
Zehr, J. P. and D. G. Capone. 2000. Ecology and molecular biology of Trichodesmium. In E. W. Triplett (ed.) Prokaryotic Nitrogen Fixation: A Model System for the Analysis of a Biological Process.
Paerl, H. W. and J. P. Zehr. 2000. Marine nitrogen fixation. In D. L. Kirchman (ed.) Microbial Ecology of the Oceans. Wiley-Liss, Inc.
Ehrlich, H. L., Oremland, R. S., and J. P. Zehr. 2000. Biogeochemical cycles. In Encyclopedia of Life Sciences. Macmillan Reference, Ltd. London. (Electronic version published in 2000).
Zehr, J. P. and M. Voytek. 1999. Molecular Biology of Aquatic Communities. [Editors]. Hydrobiologia/Developments in Hydrobiologia Volume 138. Kluwer Publishers. Amsterdam. 288 p. ISBN 0-7923-5933-X.
Zehr, J. P., B. Dominic, Chen, Y.-B. and M. Mellon. 1999. Molecular biology of nitrogen fixation in the marine cyanobacterium Trichodesmium. In The Phototrophic Prokaryotes. G. A. Peschek, W. Loffelhardt, and G. Schmetterer [ed.]. Plenum Press. New York.
Zehr, J.P. and H.W. Paerl. 1998. Molecular aspects of nitrogen fixation in the sea. In: Molecular Approaches to the Study of the Ocean. K.E. Cooksey [ed.]. Chapman and Hall.
Zehr, J.P. and W. Hiorns. 1998. Molecular approaches for assessing activities of marine organisms. In: Molecular Approaches to the Study of the Ocean. K.E. Cooksey [ed.]. Chapman and Hall.
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Recent Journal Articles (Selected)
Manuscripts in preparation
Needoba, J. A., Foster, R.A. Zehr, J. P. and K. S. Johnson. N2-fixation by unicellular cyanobacterial diazotrophs in the temperate, oligotrophic North Pacific. Marine Ecology-Progress Series.
Bonnet, S., Guieu, C., Bruyant, F., Prasil, O., Raimbault, P., Van Wambeke, F., Gorbunov, M., Zehr, J., Grob, C. Masquelier, S., Garczareck, S., Moutin, T., Claustre, H. Nutrients controlling primary productivity in the South East Pacific. Biogeosciences.
Foster, R.A., and J.P. Zehr. Calothrix rhizosoleniae SC01: a new cultured isolate from Chaetoceros compressus chains of the N. Pacific Ocean active and asymbiotic in N-free media.
Montoya, J. P., Hansen, A., Karl, D. M. and J. P. Zehr. Size-fractionated rates and patterns of N2-fixation in the North Pacific Subtropical Gyre. Appl. Environ. Microbiol.
Manuscripts submitted
Zehr, J. P., Bench, S., Mondragon, E., J. McCarren and E. F. DeLong. Submitted. Remarkable genome sequence conservation in globally distributed marine N2-fixing cyanobacteria. PNAS.
Bonnet, S. C. Guieu, F. Bruyant, O. Prasil, P. Raimbault, M. Gorbunov, J.P. Zehr, C. Grob, S. M. Masquelier, S. Blain, T. Moutin, F. Van Wambeke, and H. Claustre. Submitted. The unique nutritional status of the hyper-oligotrophic South Pacific Gyre. Nature.
Church, M. J., Bjorkman, K. M., Karl, D. M., Saito, M. A. and J. P. Zehr. Submitted. Latitudinal variations in the distribution of nitrogen-fixing bacteria in the North Pacific Ocean. Limnology and Oceanography.
Moisander, P. H., Morrison, A. E., Ward, B. B., Jenkins, B. D. and J. P. Zehr. Submitted. Spatial-temporal variability in diazotroph assemblages in Chesapeake Bay using an oligonucleotide nifH microarray. Environ. Microbiol.
Foster, R. A., Payton, A. and J. P. Zehr. Submitted. N2 fixation and nifH gene diversity in the Gulf of Aqaba (Red Sea) during fall 2005. Marine Ecology-Progress Series.
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Manuscripts in press
Zehr, J. P. and H. W. Paerl. In Press. Biological nitrogen fixation in the marine environment. In D. L. Kirchman (ed.) Microbial Ecology of the Oceans. 2nd Edition. Wiley-Liss, Inc.
Stal, L. J. and J. P. Zehr. In Press. Cyanobacterial nitrogen fixation in the ocean. Diversity, regulation and ecology. In A. Herrero and E. Flores (eds) Cyanobacteria: Molecular Biology, Genomics and Evolution. Horizon Scientific Press.
Jenkins, B. D., and J. P. Zehr. In Press. Molecular approaches to the nitrogen cycle. In D. Bronk, M. Mulholland, D. Capone and E. Carpenter (eds). Nitrogen in the Marine Environment. Academic Press.
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Published (Since 2000)
Foster, R. A., Capone, D.G., Carpenter, E. J., Mahaffey, C., Subramaniam, A. and J. P. Zehr. 2007. Influence of the Amazon River Plume on distributions of free-living and symbiotic cyanobacteria in the Western Tropical North Atlantic Ocean. Limnology and Oceanography online 52(2): xx-xx.
Short, S. M. and J. P. Zehr. 2007. Nitrogenase gene expression in the Chesapeake Bay Estuary. Environmental Microbiology online doi: 10.1111/j.1462-2920.01258.x
Hewson, I., Moisander, P. H., Achilles, K. M., Carlson, C. A., Jenkins, B. D., Mondragon, E. A., Morrison, A. E., Zehr, J. P. 2007. Characteristics of diazotrophs in surface to abyssopelagic waters of the Sargasso Sea. Aquatic Microbial Ecology. 46: 15-30.
Zehr, J. P., Montoya, J. P., Hewson, I., Mondragon, E., Short, C. M., Hansen, A., Jenkins, B. D., Church, M. J., and D. M. Karl. 2007. Experiments linking nitrogenase gene expression to nitrogen fixation in the North Pacific Subtropical Gyre. Limnology and Oceanography 52 (1): 169-183.
Jenkins, B. D., Zehr, J. P., Gibson, A., Campbell, L. 2006. Cyanobacterial assimilatory nitrate reductase gene diversity in coastal and oligotrophic marine environments. Environmental Microbiology. 8 (12): 2083-2095.
Foster, R. A. and J. P. Zehr. 2006. Characterization of diatom-cyanobacteria symbioses on the basis of nifH, hetR, and 16S rRNA sequences. Environmental Microbiology 8 (11): 1913-1925.
Moisander, P. H. Shiue, L., Steward, G. F., Jenkins, B. D., Bebout, B. M., and J. P. Zehr. 2006. Application of a nifH oligonucleotide microarray for profiling diversity of N2-fixing microorganisms in marine microbial mats. Environmental Microbiology 8 (10): 1721-1735.
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Burns, J. A., Zehr, J. P., Montoya, J. P., Kustka, A. and D. G. Capone. 2006. Effect of EDTA additions on natural Trichodesmium spp. (Cyanophyta) populations. Journal of Phycology 42: 900-904.
Gibson, A. H., Jenkins, B. D., Wilkerson, F., Short, S. M. and J. P. Zehr. 2006. Characterization of cyanobacterial glnAgene diversity and gene expression in marine environments. FEMS Microbiol. Ecol. 55: 391-402.
Church, M. J., Short, C. M., Jenkins, B. D., Karl, D. M. and J. P. Zehr. 2005. Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean. Applied and Environmental Microbiology. 71: 5362-5370.
Church, M. J., B. D. Jenkins, D. M. Karl, and J. P. Zehr. 2005. Vertical distributions of nitrogen-fixing phylotypes at Station ALOHA in the oligotrophic North Pacific Ocean. Aquatic Microbial Ecology 38: 3-14. (evaluated by Faculty of 1000).
Montoya, J. P., Holl, C. M., Zehr, J. P., Hansen, A., Villareal, T. A., and D. G. Capone. 2004. High rates of N2 fixation by unicellular diazotrophs in the oligotrophic Pacific Ocean. Nature 430:1027-1032.
Short, S. M., Jenkins, B. D., and J. P. Zehr. 2004. Spatial and temporal distribution of two diazotrophic bacteria in the Chesapeake Bay. Applied and Environmental Microbiology. 70: 2186-2192.
Jenkins, B. D., Steward, G. F., Short, S. M. Ward, B. B. and J. P. Zehr. 2004. Fingerprinting diazotroph communities in the Chesapeake Bay by using a DNA macroarray. Applied and Environmental Microbiology. 70: 1767-1776.
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Steward, B. D., Jenkins, B. D., Ward, B. B. and J. P. Zehr. 2004. Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity. Applied and Environmental Microbiology. 70: 1455-1465.
Omoregie, E. O., Crumbliss, L. L., Bebout, B. M. and J. P. Zehr. 2004. Determination of nitrogen-fixing phylotypes in Lyngbya sp. and Microcoleus chthonoplastes cyanobacterial mats from Guerrero Negro Mexico. Applied and Environmental Microbiology. 70: 2119-2128.
Omoregie, E. O., Crumbliss, L., Bebout, B. M., and J. P. Zehr. 2004. Comparison of diazotroph community structure in Lyngbya and Microcoleus dominated microbial mats from Guerrero Negro, Baja, Mexico. FEMS Microbiology Ecology. 1615: 1-14.
Steward, G. F., Zehr, J. P., Jellison, R., Montoya, J. P. and J. T. Hollibaugh. 2004. Vertical distribution of nitrogen-fixing phylotypes in a meromictic, hypersaline lake. Microbial Ecology. 47: 30-40.
Zehr, J. P., Crumbliss, L.L., Church, M. J., Omoregie, E. O., and B.D. Jenkins. 2003. Nitrogenase genes in PCR and RT-PCR reagents and implications for studies of diverse functional genes. BioTechniques. 35: 996-1005.
Karouna-Renier, N.and J. P. Zehr. 2003.Short-term exposures to chronically toxic copper concentrations induce HSP70 proteins in midge larvae (Chironomus tentans). The Science of the Total Environment. 312: 267-272.
Zehr, J.P., Jenkins, B.D., Short, S.M., and G. F. Steward. 2003. Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environmental Microbiology. 5: 539-554.
Burns, J. A., Capone, D. G., and J. P. Zehr. 2002. Nitrogen-fixing phylotypes of Chesapeake Bay and Neuse River estuary sediments. Microbial Ecology. 44: 336-343.
Zehr, J. P. and B. B. Ward. 2002. Nitrogen cycling in the ocean: New perspectives on processes and paradigms. Applied and Environmental Microbiology. 68: 1015-1024.
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Allen, A. E., Booth, M. G., Frischer, M. E. Verity, P. G., Zehr, J. P., and S. Zani. 2001. Diversity and detection of nitrate assimilation genes in marine bacteria. Applied and Environmental Microbiology. 67: 5343-5348.
Zehr, J. P., Waterbury, J. B., Turner, P. J., Montoya, J. P., Omoregie, E., Steward, G. F., Hansen, A., and D. M. Karl. 2001. Unicellular cyanobacteria fix N2 in the subtropical North Pacific Ocean. Nature. 412: 635-638.
MacGregor, B. J., Van Mooy, B., Baker, B. J., Mellon, M., Moisander, P. H., Paerl, H. W., Zehr, J. , Hollander, D. and D. A. Stahl. 2001. Microbiological, molecular biological, and stable isotopic evidence for nitrogen fixation in the open waters of Lake Michigan. Environmental Microbiology. 3: 205-219.
Affourtit, J., Zehr, J. P., and H. W. Paerl. 2001. Distribution of nitrogen-fixing microorganisms along the Neuse River Estuary, North Carolina. Microbial Ecology. 41: 114-123.
Zani, S., Mellon, M. T., Collier, J., and J. P. Zehr. 2000. Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR. Applied and Environmental Microbiology 66: 3119-3124.
Dominic, B., Zani, S., Chen, Y.-B., Mellon, M. T. and J. P. Zehr. 2000. Organization of the nif genes of the nonheterocystous cyanobacterium Trichodesmium sp. IMS101. Journal of Phycology 36: 693-701.
Zehr, J. P., Carpenter, E. J. and T. A. Villareal. 2000. New perspectives on nitrogen-fixing microorganisms in tropical and subtropical oceans. Trends in Microbiology. 8: 68-73.
Zehr, J. P. and M. A. Voytek. 1999. Molecular ecology of aquatic communities: Reflections and future directions. Hydrobiologia 401: 1-8
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Abstracts (partial list of major abstracts)
Goebel, N. L., Edwards, C. A., Church, M. J., Achilles, K. M., and J. P. Zehr. Relative Contribution Of Three Cyanobacteria Phylotypes To Total Nitrogen (N2) Fixation At Station Aloha. ASLO Aquatic Sciences Meeting. Santa Fe, NM. Feb 4-9, 2007.
Pennebaker, K. M., Mondragon, E., Rabouille, S., van den Engh, G. and Zehr, J. P. (poster) Circadian Expression of NifH in Crocosphaera watsonii WH 8501 and Proposed Relationship with Chromosome Compaction. ASLO Aquatic Sciences Meeting. Santa Fe, NM. Feb 4-9, 2007.
Rabouille, S. ASLO Aquatic Sciences Meeting. Santa Fe, NM. Feb 4-9, 2007.
Hewson, I. and J. P. Zehr. (poster) Assessment of a novel targeted long-range amplification and large-construct library approach to study the genomics of uncultured marine diazotrophs, the group A cyanobacteria. International Society for Microbial Ecology (ISME), 11th symposium. Vienna, Austria. Aug. 20-26, 2006.
Moisander, P.H., Hewson, I., Morrison, A.E., and J. P. Zehr. (poster)Diversity and expression of nifH in oceanic waters using a 768-probe microarray and comparisons with qPCR and qRT-PCR International Society for Microbial Ecology (ISME), 11th symposium. Vienna, Austria. Aug. 20-26, 2006.
Bench, S, Mondragon, E., DeLong, E., J.P. Zehr. (poster) identification of Marine Nitrogen Fixing Cyanobacteria Though Analysis of Environmental DNA Sequences. International Society for Microbial Ecology (ISME), 11th symposium. Vienna, Austria. Aug. 20-26, 2006.
Moisander, P.H., Morrison, A.E., Ward, B.W., Bebout, B.M., Zehr J.P. Characterization of spatial-temporal variability in diazotroph assemblages in the Chesapeake Bay using a high-density oligonucleotide nifH microarray. American Society of Microbiology General Meeting. Orlando, FL, USA. May, 2006.
Foster, R. A. and J. P. Zehr. Diatom-Richelia Diversity, Distribution, and Cultivation. American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI. February 20-24, 2006.
Fong, A. A., Church, M. J., Karl, D. M., Lukas, R., Mahaffey, C., and J. P. Zehr. Diazotroph Abundance and Diversity During a Large Bloom in the Oligotrophic North Pacific Gyre. American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI. February 20-24, 2006.
Church, M. J., Mahaffey, C., Fong, A. A., J. P. Zehr and D. M. Karl. Time Series Investigations into the Dynamics of Nitrogen Fixing Bacteria and Rates of Nitrogen Fixation at Station ALOHA. American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI. February 20-24, 2006.
Haddock, Traci, Zehr, J. P. and Jenkins, B. Shifts in cyanobacterial community composition revealed by comparison of assimilatory nitrate reductase sequences. American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI. February 20-24, 2006.
Hewson, I., K.A. Achilles, C.A. Carlson, B.D. Jenkins, P.H. Moisander, E.A. Mondragon, A.E. Morrison, J.P. Zehr. Insights into diazotroph ecology at Hydrostation S (North Atlantic Ocean) based upon culture-independent approaches” American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI. February 20-24, 2006.
Montoya, J.P., Hansen, A., Karl, D.M. and J. P. Zehr. 2006. Size-Fractionated Rates and Patterns of Nitrogen and Carbon Fixation in the North Pacific Subtropical Gyre. American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI USA. February 20-24, 2006.
Zehr, J.P. Montoya, J. P., Short, C., Hansen, A., Jenkins, B. D., Church, M. J. and D. M. Karl. 2006. Nitrogenase Gene Expression in the North Pacific Subtropical Gyre. American Geophysical Union/American Society of Limnology and Oceanography. Honolulu, HI. February 20-24, 2006.
Zehr, J.P., DeLong, E., Church, M., Short, C., Mondragon, E., Jenkins, B. 2005. Nitrogen Fixation by Nanoplankton in the Open Ocean: New Players Playing By New Rules? American Society for Limnology and Oceanography. Santiago de la Compostela, Spain. (Invited).
Foster, R. A., Jenkins, B. D., and J. P. Zehr. Diverse Microbial assemblages cultivated under diazotrophic conditions. American Society for Limnology and Oceanography. Santiago de la Compostela, Spain.
Clemente, T. Bjorkman, K., Dafner, E., Fujieki, L., Jachowski, N., Sadler, D., Corno, G., Letelier, R., Church, M., Zehr, J. and Karl, D. 2004. Regionalization of the Hawaii Ocean Time-series (HOT) Observations. The Oceanographic Society (TOS) and American Society for Limnology and Oceanography (ASLO) Ocean Research Conference. Honolulu, HI.
Zehr, J. P., Jenkins, B. D., Steward, G. F., Ward, B. B., and Jackson, G. 2003. Biocomplexity, Bioinformatics and Micromanagement of Microarrays of Nitrogenase Genes. American Society for Limnology and Oceanography. Salt Lake City, Utah.
Steward, G. F., Zehr, J. P., Jenkins, B. D., Montoya, J. P., Jellison, R. S., Hollibaugh, J. T. 2003. Diverse Nitrogen-Fixer, But Undectable Nitrogen Fixation in Alkaline, Hypersaline, Meromictic Mono Lake, California. American Society for Limnology and Oceanography. Salt Lake City, Utah.
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Montoya, J.P., J.P. Zehr, and D.G. Capone. 2002. Rates and Patterns of Nitrogen Fixation by Unicellular Cyanobacteria in Pelagic Waters. American Society for Limnology and Oceanography Ocean Science Meeting.
Zehr, J. P. 2002. Nitrogen Assimilation: from Genomes to Gene Expression in the Oceans. American Society for Limnology and Oceanography Ocean Science Meeting.
Burns, J. A., Zehr, J. P. and D. G. Capone. Effect of EDTA Additions on Natural Trichodesmium spp. Populations. American Society for Limnology and Oceanography Ocean Science Meeting.
Jenkins, B.D., Gibson, A., Cano, A., Wilkerson, F. and J.P. Zehr. 2002. Diversity of Cyanobacterial Nitrate Reductase and Development of Molecular Probes for Nitrogen Assimilation Genes. American Society for Limnology and Oceanography Ocean Science Meeting.
Steward, G.F., Stephens, A., Jenkins, B. and J.P. Zehr. Bioinformatics and DNA Arrays for Investigating the Molecular Ecology of Nitrogen Fixation. American Society for Limnology and Oceanography Ocean Science Meeting.
Ray, M. and J. P. Zehr. 2001. Amplification of Cyanobacterial narB Genes from Oceanic Plankton, and Implications for Nitrogen Assimilation. Aquatic Sciences Meeting, American Society for Limnology and Oceanography, Albuquerque, New Mexico.
Steward, G.F., Jellison, R.S., Hollibaugh, J.T., Joye, S.B., and Zehr, J.P. 2001. Detection of Novel and Diverse Nitrogenase Genes Suggests Potential for Pelagic Diazotrophy in Alkaline, Hypersaline Mono Lake. Aquatic Sciences Meeting, American Society for Limnology and Oceanography, Albuquerque, New Mexico.
Zehr, J. P., Turner, P. J., Omoregie, E., Hansen, A., Steward, G. F., Montoya, J. P., Tupas, L., Karl, D. M. Nitrogenase Gene Expression in the North Pacific Gyre. Aquatic Sciences Meeting, American Society for Limnology and Oceanography, Albuquerque, New Mexico.
Kirshtein, J. D., Turner, P. J., Paerl, H. W. and Zehr, J. P. 2000. Distribution of Nitrogen-Fixing Phylotypes Along a Salinity Gradient in the Neuse River, North Carolina. American Society for Microbiology Annual Meeting. Los Angeles.
Booth, M.G., Allen, A.E., Frischer, M.E., Verity, P.G., Bronk, D.A., and Zehr, J. P. 2000. The Genetic Diversity of the Assimilatory Nitrate Reductase Gene in Heterotrophic Marine Bacterioplankton. American Society for Microbiology Annual Meeting. Los Angeles.
Zehr, J. P. 2000. Secret Ingredients of the New Nitrogen Cycle: are Other Nitrogen Fixers Important in the Open Ocean? American Society of Limnology and Oceanography and American Geophysical Union Ocean Sciences Meeting. San Antonio, Texas.
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CURRENT RESEARCH SUPPORT
| Funded Proposals (last 5 years) |
| 2006-2009 |
Center for Microbial Oceanography: Research and Education (C-MORE). NSF. (UCSC). (2006-2011) University of Hawaii/MIT/UCSC. |
| 2005-2008 |
Microbial Environmental Genomics Applications, Remote Sensing and Modeling Facility. UCSC. Gordon and Betty Moore Foundation. 3 year award, extendable to 8 years total. Gary Griggs, co-PI. |
| 2004-2008 |
Collaborative: Biology and Ecology of Newly Discovered Diazotrophs in the Open Ocean. NSF. (UCSC). (2005-2009). |
| 2004-2009 |
Gordon and Betty Moore Foundation Investigator in Marine Microbiology. (This was an unsolicited award, not a proposal.) |
| 2003-2006 |
Molecular and stable isotope investigations of nitrogen cycling in microbial mats. (B. Bebout, NASA Ames, co-PI). |
| 2003-2004 |
Molecular Approaches to the Identification of Microorganisms in Microbial Mats. Cooperative Agreement, NASA Ames (L. Prufert-Bebout co-PI). |
| 2003-2006 |
Department of Education, Graduate Assistantships in Areas of National Need: Ocean Sciences. |
2002-2005 |
NSF-Biological Oceanography. Collaborative Research: Biology and Phylogeny of Marine Planktonic Cyanobacterial Symbioses (E.J. Carpenter, SFSU, co-PI). |
| 2001-2003 |
NSF Major Research Instrumentation. Acquisition of Instrumentation to Enhance the Molecular Ecology and Evolutionary Genetics Facility at UCSC. (J. Zehr and J. Thompson) OCE-0116278. (2001-2004) NSF funds. |
| 2001 |
NSF-ECOHAB. Development of Molecular and Biochemical Signatures for the Detection of Toxin Production in Pseudo-nitzschia spp. Under Nutrient Stress (Collaborative: R. Kudela, V. Armbrust, G. Smith and J. Zehr) OCE-0138544. (2001-2004). |
| 2000 |
DOE BI-OMP. The coupling between carbon and nitrogen cycles in coastal upwelling ecosystems: biogeochemical cycling and its molecular basis, Collaborative with San Francisco State University and Princeton University. (2000-2003). |
| 2000 |
NERC Research grant # GST/02/2835 (National Environmental Research Council, UK). Nitrogen-fixing microbes in the sea: A molecular approach linking phenotype to 16S rRNA phylotype. Principal Investigator Mike Wyman, Co-Investigator, Tony O'Donnell, Collaborator, J. P. Zehr. (2000-2002) Collaboration only. |
| 2000 |
NSF-Biocomplexity, Collaborative Research: Biocomplexity of Aquatic Microbial Systems (Collaborative Research: Biocomplexity of Aquatic Microbial Systems:Relating Diversity of Microrganisms to Ecosystem Function). (2000-2005). |
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Research Cruises
| 2007 |
R/V Kilo Moana. 30 days. Southern Pacific Ocean J. P. Zehr and J. P. Montoya, Chief Scientists |
| 2006 |
R/V Seward Johnson. 30 days. Equatorial Atlantic Ocean. J. P. Zehr and J. P. Montoya, Chief Scientists. |
| 2002 |
R/V Kilo Moana. 5 days. |
| 2000 |
Chief Scientist on the RV Melville, 5 weeks August/September: upwelling systems off Peru. |
| 1999 |
Chief Scientist on the RV Point Sur, 3 weeks, June/July: Upwelling systems off central California. |
| 1997 |
Chief Scientist on the RV Point Sur, 3.5 weeks, Jun/July: upwelling systems off the US west coast. |
| 1996 |
Chief Scientist on the RV Point Sur, 3 weeks, Jun/July: upwelling systems off central California. |
| 1995 |
R/V Seward Johnson. 21 days, 28 scientists. Dr. J.P. Zehr, Chief Scientist. |
| 1995 |
RV Point Sur, 3 weeks, July; upwelling systems off central California, Chief Scientist. |
| 1994 |
Chief Scientist, 1 week, June; Narragansett Bay, Rhode Island. |
| 1993 |
R/V Iselin. Bahamas. 21 days. Dr. J.P. Zehr, Chief Scientist. |
| 1993 |
R/V Iselin. E. Caribbean. Dr. E.J. Carpenter, Chief Scientist. |
| 1992 |
R/V Iselin. Bahamas. Dr. D.G. Capone, Chief Scientist. |
| 1991 |
R/V Weatherbird II. Sargasso Sea. Dr. E.J. Carpenter, Chief Scientist. |
| 1991 |
RV Moana Wave, 5 weeks, August; Equatorial Pacific, Chief Scientist. |
| 1990 |
R/V Iselin. E. Caribbean. Drs. E.J. Carpenter and J.P. Zehr, Chief Scientists. |
| 1989 |
R/V Iselin. E. Caribbean. Dr. D.G. Capone, Chief Scientist. |
| 1988 |
R/V Iselin. E. Caribbean. Dr. E.J. Carpenter, Chief Scientist. |
| 1987 |
R/V Endeavor. N. Atlantic. Dr. C. Flagg, Chief Scientist. |
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CURRENT TEACHING ASSIGNMENTS
University of California, Santa Cruz
| Life in the Sea (OCEA 80A) |
| Marine Microbial Ecology (OCEA 118/218/BIOL 171) |
| Marine Microbial Ecology Lab (OCEA 118L/218L/BIOL 171L) |
| Topics in Marine Microbial Ecology/Marine Nitrogen Fixation (OCEA 290D) |
| Ocean Sciences Seminar (OCEA 292) |
| Various directed thesis research and independent study programs in Biology and Ocean Sciences |
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SPONSORED STUDENT RESEARCH
Postdoctoral Associates
2007-present |
Rachel Foster |
2006-present |
Tuo Shi |
2005-present |
Nicole Goebel (Christopher Edwards, Raphael Kudela, co-advisors) |
2005-present |
Sophie Rabouille (Christopher Edwards, Raphael Kudela, co-advisors) |
| 2005-present |
Ian Hewson |
| 2005-2007 |
Kate Achilles |
| 2004-2006 |
Rachel Foster |
| 2004-present |
Pia Moisander |
| 2003-2004 |
Matthew Church |
| 2002-2004 |
Steven M. Short |
| 2001-2005 |
Bethany Jenkins |
| 2000-2002 |
Grieg Steward. (Currently Assistant Professor, University of Hawaii) |
| 1995-1997 |
William Hiorns. Rensselaer. |
| 1994-1997 |
Bahram Momen. Rensselaer. (Currently Assistant Professor, University of Maryland) |
Ph.D. Theses Supervision
2006-present |
Jason Hilton. UCSC |
2005-present |
Shellie Bench. UCSC |
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2005-present |
Ryan Paerl. UCSC |
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2003-present |
Sandra Roll.UCSC. Leave of Absence |
2001-2003 |
Aaron Cozen. UCSC. Transferred to T. Lowe laboratory. UCSC. |
1997-2002 |
Sean Clarkin."Denitrification in Forested Catchments of the Catskill Mountains." Rensselaer. |
1995-2001 |
Natalie Karouna. "Use of a Heat Shock Protein Assay to Monitor Stress in Stream Invertebrate Communities." Rensselaer. |
1994-1999 |
Benny Dominic. "Arrangement and Expression of Nitrogenase Genes in the Cyanobacterium Trichodesmium". Rensselaer. (Currently Researcher at Abbot Pharmaceuticals). |
1994-1998 |
Yi-Bu Chen. "Regulation of the Nitrogen Fixation Apparatus in Trichodesmium." Rensselaer. (Currently Research Associate, Rutgers University). |
1995-1998 |
Barbara Methé. "Impacts of Acidification on Aquatic Microbial Community Structure." Rensselaer. [Currently Research Scientist at The Institute for Genomic Research (TIGR)]. |
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Masters Thesis Advisor
2005-present |
Katie London |
2005-present |
Kory Pennebaker |
2006-present |
Sarah Mansergh, UCSC. |
2001-2004 |
Angela Gibson. "Nitrogen assimilation genes in marine cyanobacteria". UCSC. |
2000-2002 |
Enoma Omoregie. "Nitrogen fixation in cyanobacterial mats from Guerrero Negro, Baja, Mexico." UCSC. |
1997-1999 |
Sabino Zani. “Expression of nifH Genes in Natural Microbial Assemblages in Lake George, NY Detected with RT-PCR.” Rensselaer. |
1995–1997 |
Jason Affourtit. Rensselaer. “Characterization and Quantitation of Nitrogenase Genes from Estuarine Microorganisms along a Salinity Gradient.” Rensselaer. |
1996-1999 |
Maria Viggiani. "Role of Denitrification in Nitrate Depletion in Catskill Streams." Rensselaer. |
1994-1996 |
Sarah Braun. "Amplification and Characterization of Nitrogenase Genes from Marine Microorganisms." Rensselaer. |
1993 |
Karen Galindo. "The Use of PCR Amplification Techniques for the Assessment of Nitrogen-Fixing Capabilities of Natural Open Ocean Communities." SUNY at Stony Brook. Currently working in the Biological Sciences Unit, Suffolk County Crime Laboratory, New York. |
1993 |
Judith Ben-Porath. "Development of Gene Probes for Nitrogen Fixing Cyanobacterial Communities." SUNY at Stony Brook. |
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